Fire: Created page with "{{Navbox |name = Bioinformatics |state = {{{state|autocollapse}}} |title = Bioinformatics |listclass = |group1 = Databases |list1 = * Sequence databases: GenBank, European Nucleotide Archive, DNA Data Bank of Japan and China National GeneBank * Secondary databases: UniProt, database of protein sequences grouping together Swiss-Prot, UniProt#UniProtKB.2FTrE..."

2023-11-14T04:54:23Z

Created page with "{{Navbox |name = Bioinformatics |state = {{{state<includeonly>|autocollapse</includeonly>}}} |title = Bioinformatics |listclass = |group1 = Databases |list1 = * Sequence databases: GenBank, European Nucleotide Archive, DNA Data Bank of Japan and China National GeneBank * Secondary databases: UniProt, database of protein sequences grouping together Swiss-Prot, UniProt#UniProtKB.2FTrE..."

New page

{{Navbox
|name = Bioinformatics
|state = {{{state<includeonly>|autocollapse</includeonly>}}}
|title = [[Bioinformatics]]
|listclass =

|group1 = Databases
|list1 =
* Sequence databases: [[GenBank]], [[European Nucleotide Archive]], [[DNA Data Bank of Japan]] and [[China National GeneBank]]
* Secondary databases: [[UniProt]], database of protein sequences grouping together [[UniProt#UniProtKB.2FSwiss-Prot|Swiss-Prot]], [[UniProt#UniProtKB.2FTrEMBL|TrEMBL]] and [[Protein Information Resource]]
* Other databases: [[BioNumbers]], [[Protein Data Bank]], [[Ensembl genome database project|Ensembl]], [[InterPro]], [[KEGG]], and [[Gene ontology|Gene Ontology]]
* Specialised genomic databases: [[Barcode of Life Data System|BOLD]], [[Saccharomyces Genome Database]], [[FlyBase]], [[VectorBase]], [[WormBase]], [[Rat Genome Database]], [[PHI-base]], [[The Arabidopsis Information Resource|Arabidopsis Information Resource]], [[GISAID]] and [[Zebrafish Information Network]]

|group2 = Software
|list2class = hlist
|list2 =
* [[BLAST]]
* [[Bowtie (sequence analysis)|Bowtie]]
* [[Clustal]]
* [[EMBOSS]]
* [[HMMER]]
* [[MUSCLE (alignment software)|MUSCLE]]
* [[Phylogenetic Assignment of Named Global Outbreak Lineages|PANGOLIN]]
* [[SAMtools]]
* [[Short Oligonucleotide Analysis Package|SOAP suite]]
* [[TopHat (bioinformatics)|TopHat]]

|group3 = Other
|list3class = hlist
|list3 =
* Server: [[ExPASy]]
* [[Rosalind (education platform)]]

|group4 = Institutions
|list4class = hlist
|list4 =
* [[Broad Institute]]
* [[Computational Biology Department]] (CBD)
* [[COSBI|Microsoft Research - University of Trento Centre for Computational and Systems Biology]] (COSBI)
* [[Database Center for Life Science]] (DBCLS)
* [[DNA Data Bank of Japan]] (DDBJ)
* [[European Bioinformatics Institute]] (EMBL-EBI)
* [[European Molecular Biology Laboratory]] (EMBL)
* [[Flatiron Institute]]
* [[J. Craig Venter Institute]] (JCVI)
* [[Max Planck Institute of Molecular Cell Biology and Genetics]] (MPI-CBG)
* [[National Center for Biotechnology Information|US National Center for Biotechnology Information]] (NCBI)
* [[National Institute of Genetics|Japanese Institute of Genetics]]
* [[Netherlands Bioinformatics Centre]] (NBIC)
* [[Philippine Genome Center]] (PGC)
* [[Scripps Research]]
* [[Swiss Institute of Bioinformatics]] (SIB)
* [[Wellcome Sanger Institute]]
* [[Whitehead Institute]]

|group5 = Organizations
|list5class = hlist
|list5 =
* [[African Society for Bioinformatics and Computational Biology]] (ASBCB)
* [[Australia Bioinformatics Resource]] (EMBL-AR)
* [[EMBnet|European Molecular Biology network]] (EMBnet)
* [[International Nucleotide Sequence Database Collaboration]] (INSDC)
* [[International Society for Biocuration]] (ISB)
* [[International Society for Computational Biology]] (ISCB)
** [[International Society for Computational Biology Student Council|Student Council]] (ISCB-SC)
* [[Institute of Genomics and Integrative Biology]] (CSIR-IGIB)
* [[Japanese Society for Bioinformatics]] (JSBi)

|group6 = Meetings
|list6class = hlist
|list6 =
* [[Basel Computational Biology Conference‎]] ([BC<sup>2</sup>])
* [[European Conference on Computational Biology]] (ECCB)
* [[Intelligent Systems for Molecular Biology]] (ISMB)
* [[International Conference on Bioinformatics]] (InCoB)
* [[International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics]] (CIBB)
* [[ISCB Africa ASBCB Conference on Bioinformatics]]
* [[Pacific Symposium on Biocomputing]] (PSB)
* [[Research in Computational Molecular Biology]] (RECOMB)

|group7 = File formats
|list7class = hlist
|list7 =
* [[CRAM (file format)|CRAM format]]
* [[FASTA format]]
* [[FASTQ format]]
* [[NeXML format]]
* [[Nexus file|Nexus format]]
* [[Pileup format]]
* [[SAM (file format)|SAM format]]
* [[Stockholm format]]
* [[Variant Call Format|VCF format]]
* [[General feature format|GFF format]]

|group8 = Related topics
|list8class = hlist
|list8 =
* [[Computational biology]]
* [[List of biobanks]]
* [[List of biological databases]]
* [[Molecular phylogenetics]]
* [[Sequencing]]
* [[Sequence database]]
* [[Sequence alignment]]

| belowclass = hlist
| below =
* {{Icon|Category}} '''[[:Category:Bioinformatics|Category]]'''
* {{icon|Commons}} '''[[:Commons:Category:Bioinformatics|Commons]]'''
}}<noinclude>
{{documentation|content=
{{collapsible option}}

{{DEFAULTSORT:Bioinformatics}}
[[Category:Biology navigational boxes]]
}}
</noinclude>

Template:Bioinformatics - Revision history